Membrane state diagrams make electrophysiological models simple

نویسنده

  • Stephanie R. Jones
چکیده

Ion channels are ubiquitous in living systems. Through interactions with membrane potential, ion channels both control metabolic events and mediate cell communication. Consequentially, membrane bioelectricity bears on fields ranging from cancer etiology to computational neuroscience. Conductance models have proven successful in quantitatively capturing these dynamics but are often considered difficult, with interpretation relegated to specialists. To facilitate research in membrane dynamics, especially in fields where roles for ion channels are just beginning to be quantified, we must make these models easy to understand. Here, we show that the membrane differential equation central to conductance models can be understood using simple circular geometry. The membrane state diagrams we construct are compact, faithful representations of conductance model state, designed to look like circular “cells” with currents flowing in and out. Every feature of a membrane state diagram corresponds to a physiological variable, so that insight taken from a diagram can be translated back to the underlying model. The construction is elementary: we convert conductances to angles subtended on the circle and potentials to radii; currents are then areas of the enclosed annular sectors. Our method clarifies a powerful but prohibitive modeling approach and has the potential for widespread use in both electrophysiological research and pedagogy. We illustrate how membrane state diagrams can augment traditional methods in the stability analysis of voltage equilibria and in depicting the Hodgkin-Huxley action potential, and we use the diagrams to infer the possibility of nontrivial fixed-voltage channel population dynamics by visual inspection rather than linear algebra. 1 . CC-BY 4.0 International license peer-reviewed) is the author/funder. It is made available under a The copyright holder for this preprint (which was not . http://dx.doi.org/10.1101/051839 doi: bioRxiv preprint first posted online May. 5, 2016;

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

The state dependency effect of morphine on memory by behavioral and electrophysiological methods in freely moving rats

Endogenous opioid system agonists exert amnestic effects in different models of memory. It has been suggested that these amnestic effects may be linked indirectly to state-dependent learning. Accordingly pre-training administration of morphine can impair the retrieval of learned tasks in a state dependent manner, which is reversible by pre test morphine administration. In this study, state depe...

متن کامل

The state dependency effect of morphine on memory by behavioral and electrophysiological methods in freely moving rats

Endogenous opioid system agonists exert amnestic effects in different models of memory. It has been suggested that these amnestic effects may be linked indirectly to state-dependent learning. Accordingly pre-training administration of morphine can impair the retrieval of learned tasks in a state dependent manner, which is reversible by pre test morphine administration. In this study, state depe...

متن کامل

Mathematical Models for Microbial Kinetics in Solid-State Fermentation: A Review

  Context:In this review, we discuss empirical and stoichiometric models, which have been developed recently in SSF processes and the influence of environmental conditions on the variables of these models. Additionally, new studies on modeling of product formation are also mentioned. <span style="color: windowtext...

متن کامل

A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms

Modelling ionic channels represents a fundamental step towards developing biologically detailed neuron models. Until recently, the voltage-gated ion channels have been mainly modelled according to the formalism introduced by the seminal works of Hodgkin and Huxley (HH). However, following the continuing achievements in the biophysical and molecular comprehension of these pore-forming transmembr...

متن کامل

Checking the Validity of Scenarios in UML Models

In the UML, sequence diagrams are used to state scenarios, i.e., examples of interactions between objects. As such, sequence diagrams are being developed in the early design phases where requirements on the system are being captured. Their intuitively appealing character and conceptual simplicity makes them an ideal tool for formulating simple properties on a system, even for non-experts. Besid...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2016